Basic Information
Locus ID:
Ceq08G0007
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 44384 | 45662 | + | Ceq08G0007 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 40,379.85 Da | 45.93 | 87.47 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 303 | 1.68E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 349 | 9.7E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 166 | 204 | 9.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 295 | 3.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 163 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 298 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 298 | 11.07656 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_018834026.1 | WD repeat-containing protein LWD1 [Juglans regia] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1ULC5 | WD repeat-containing protein LWD1 OS=Morella rubra OX=262757 GN=CJ030_MR0G006829 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology