Basic Information
Locus ID:
Ceq07G2155
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 24552627 | 24558406 | - | Ceq07G2155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 80,396.34 Da | 49.99 | 64.59 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 406 | 429 | 0.88 | IPR002885 |
| Pfam | PF04749 | PLAC8 family | 47 | 106 | 4.7E-14 | IPR006461 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 606 | 700 | 9.4E-33 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 433 | 460 | 3.8E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 403 | 596 | 2.9E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 433 | 465 | 8.0E-4 | IPR002885 |
| TIGRFAM | TIGR01571 | A_thal_Cys_rich: uncharacterized Cys-rich domain | 43 | 109 | 1.0E-16 | IPR006461 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | 11.049048 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 213 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_040999393.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QNU9 | DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_004514 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology