Basic Information
Locus ID:
Ceq07G2147
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the glycosyl hydrolase 13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 24508150 | 24523844 | + | Ceq07G2147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 112,389.65 Da | 36.07 | 79.29 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11314 | AmyAc_arch_bac_plant_AmyA | 39 | 392 | 1.20625E-151 | - |
| CDD | cd11314 | AmyAc_arch_bac_plant_AmyA | 477 | 824 | 5.08327E-146 | - |
| Pfam | PF00128 | Alpha amylase, catalytic domain | 506 | 692 | 2.2E-10 | IPR006047 |
| Pfam | PF07821 | Alpha-amylase C-terminal beta-sheet domain | 383 | 439 | 3.4E-14 | IPR012850 |
| Pfam | PF00128 | Alpha amylase, catalytic domain | 66 | 359 | 1.2E-12 | IPR006047 |
| Pfam | PF07821 | Alpha-amylase C-terminal beta-sheet domain | 815 | 870 | 8.4E-14 | IPR012850 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 890 | 1000 | 1.63E-15 | IPR017853 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 476 | 797 | 3.76E-67 | IPR017853 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 38 | 365 | 9.11E-68 | IPR017853 |
| SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 386 | 439 | 3.96E-14 | - |
| SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 818 | 870 | 8.63E-12 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 37 | 385 | 3.3E-135 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 475 | 817 | 1.8E-128 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 869 | 1005 | 5.3E-25 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 386 | 441 | 2.1E-19 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1180 | - | 818 | 868 | 3.6E-16 | IPR013780 |
| SMART | SM00810 | alpha-amyl_c2 | 814 | 874 | 2.3E-20 | IPR012850 |
| SMART | SM00810 | alpha-amyl_c2 | 382 | 442 | 2.8E-27 | IPR012850 |
| SMART | SM00642 | aamy | 476 | 813 | 1.2E-46 | IPR006047 |
| SMART | SM00642 | aamy | 38 | 381 | 4.8E-47 | IPR006047 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25000.1 | alpha-amylase-like. Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). | 0 |
| RefSeq | XP_023913396.1 | alpha-amylase-like [Quercus suber] | 0 |
| P17859 | Alpha-amylase OS=Vigna mungo OX=3915 GN=AMY1.1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A498K3I6 | alpha-amylase OS=Malus domestica OX=3750 GN=DVH24_021633 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11975 |
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_17112, gene_17902, gene_18983, gene_18984, gene_20013 ... |
| Amaranthaceae | Atriplex hortensis | 8 | Ah009601, Ah009602, Ah009611, Ah017759, Ah017761, Ah017762 ... |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_9g213260, BVRB_9g213270, BVRB_9g213280, BVRB_9g213370 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12301, Sbi_jg47289, Sbi_jg47292 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21560, Seu_jg21562 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55525, Sgl60745 |
| Amaranthaceae | Chenopodium album | 12 | gene:ENSEOMG00000008859, gene:ENSEOMG00000013627 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.7BG0002320, CQ.Regalona.r1.7BG0002330 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045260 |
| Apiaceae | Apium graveolens | 1 | Ag5G02491 |
| Arecaceae | Cocos nucifera | 2 | scaffold000431G000020, scaffold000431G000030 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103722582, gene-LOC103722583, gene-LOC120104902 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1812.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G22637 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025232m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g012250.2N, BniB05g021450.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2110, Ceq07G2147 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2251, Cgl07G2375, Cgl07G2376 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1267 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2122, evm.TU.LG06.435 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027632 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb2G12055, Lb2G12058, Lb4G21549, Lb7G35566, Lb7G35567 |
| Poaceae | Echinochloa crus-galli | 29 | AH02.2502, AH03.2166, AH03.2167, AH06.2731, AH06.2968 ... |
| Poaceae | Eleusine coracana subsp. coracana | 19 | gene-QOZ80_2AG0146880, gene-QOZ80_2AG0146890 ... |
| Poaceae | Hordeum vulgare | 12 | HORVU.MOREX.r3.5HG0486500.1, HORVU.MOREX.r3.6HG0617430.1 ... |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_005697, gene-QYE76_005699, gene-QYE76_025612 ... |
| Poaceae | Oryza coarctata | 11 | Oco03G022560, Oco04G023220, Oco12G017370, Oco15G012800 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os02g52700.1, LOC_Os02g52710.1, LOC_Os06g49970.2 ... |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_01G178100, gene-BS78_02G204300, gene-BS78_K053500 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0104496, Pt_Chr0104497, Pt_Chr0203158, Pt_Chr0203159 ... |
| Poaceae | Sporobolus alterniflorus | 10 | Chr02G033240, Chr05G000580, Chr09G019110, Chr13G003340 ... |
| Poaceae | Thinopyrum elongatum | 9 | Tel4E01G479600, Tel5E01G385800, Tel5E01G386100 ... |
| Poaceae | Triticum dicoccoides | 18 | gene_TRIDC4BG049100, gene_TRIDC5AG037650 ... |
| Poaceae | Triticum aestivum | 30 | TraesCS4B02G285400.1, TraesCS4B02G285600.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb038060_P001, Zm00001eb100790_P001 ... |
| Poaceae | Zoysia japonica | 11 | nbis-gene-17202, nbis-gene-17204, nbis-gene-19668 ... |
| Poaceae | Zoysia macrostachya | 8 | Zma_g14498, Zma_g17213, Zma_g22841, Zma_g24217, Zma_g24218 ... |
| Portulacaceae | Portulaca oleracea | 13 | evm.TU.LG01.549, evm.TU.LG02.710, evm.TU.LG02.712 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g30550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.954 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8869 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20664, nbisL1-mrna-20665 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.301 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003502 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11424 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23829 |
| Salicaceae | Populus euphratica | 1 | populus_peu31978 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627863, gene-LOC132627865 |
| Solanaceae | Solanum chilense | 2 | SOLCI002762200, SOLCI004793700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013022 |
| Tamaricaceae | Reaumuria soongarica | 4 | gene_10148, gene_10149, gene_10944, gene_8015 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2210 |