Basic Information
Locus ID:
Ceq07G1710
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 18431494 | 18435416 | - | Ceq07G1710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 46,154.80 Da | 34.56 | 83.43 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 358 | 393 | 7.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 337 | 7.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 214 | 250 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 293 | 8.0E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 19 | 91 | 6.9E-22 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 115 | 398 | 3.33E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 411 | 3.2E-129 | IPR015943 |
| SMART | SM00320 | WD40_4 | 297 | 337 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 250 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 293 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 394 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 201 | 3.8E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 217 | 259 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 295 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 168 | 203 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 168 | 203 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 304 | 339 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 304 | 339 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 361 | 395 | 9.205141 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 188 | 202 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 324 | 338 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 188 | 202 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 381 | 395 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 324 | 338 | 1.8E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_018823894.1 | WD-40 repeat-containing protein MSI3-like [Juglans regia] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QS61 | CAF1C_H4-bd domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005241 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology