Basic Information
Locus ID:
Ceq07G1282
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 12641525 | 12650148 | - | Ceq07G1282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 114,393.09 Da | 38.08 | 110.66 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 75 | 358 | 2.20679E-94 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 767 | 987 | 2.08157E-118 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 554 | 687 | 8.4E-8 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 76 | 337 | 3.5E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 786 | 934 | 7.3E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 419 | 474 | 7.83E-9 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 67 | 365 | 5.36E-30 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 553 | 749 | 3.92E-15 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 761 | 993 | 2.49E-64 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 502 | 694 | 8.5E-18 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 408 | 496 | 5.6E-10 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 62 | 367 | 3.5E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 752 | 1005 | 7.6E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 795 | 978 | 3.7E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 75 | 350 | 32.378941 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 769 | 1003 | 17.173672 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 554 | 687 | 16.494646 | IPR011527 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_035540581.1 | putative ABC transporter C family member 15 [Juglans regia] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R3Q4 | ABC-type xenobiotic transporter OS=Carpinus fangiana OX=176857 GN=FH972_009307 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology