Basic Information
Locus ID:
Ceq07G1281
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 12620628 | 12627180 | - | Ceq07G1281 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 141,428.05 Da | 40.47 | 108.86 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 105 | 388 | 4.65799E-96 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 706 | 985 | 4.73123E-67 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1008 | 1228 | 1.13081E-117 | - |
| Pfam | PF00005 | ABC transporter | 1027 | 1175 | 5.4E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 106 | 367 | 2.3E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 440 | 570 | 1.4E-14 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 739 | 818 | 1.6E-6 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 848 | 933 | 2.2E-6 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1002 | 1236 | 1.9E-63 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 707 | 992 | 2.49E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 96 | 393 | 1.57E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 440 | 620 | 3.59E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 439 | 650 | 4.8E-55 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 844 | 991 | 2.5E-21 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 993 | 1246 | 3.2E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 670 | 826 | 1.3E-15 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 92 | 399 | 1.3E-44 | IPR036640 |
| SMART | SM00382 | AAA_5 | 444 | 607 | 5.7E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1036 | 1227 | 2.7E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 708 | 973 | 17.677317 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 392 | 630 | 16.580103 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1010 | 1244 | 16.093245 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 105 | 380 | 32.899925 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 543 | 557 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_042979730.1 | putative ABC transporter C family member 15 [Carya illinoinensis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R3Q4 | ABC-type xenobiotic transporter OS=Carpinus fangiana OX=176857 GN=FH972_009307 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology