Basic Information
Locus ID:
Ceq07G0750
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 6891848 | 6906278 | - | Ceq07G0750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 81,315.26 Da | 41.01 | 69.04 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 494 | 747 | 1.26069E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 713 | 748 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 631 | 665 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 539 | 572 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 530 | 0.0032 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 494 | 747 | 3.66E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 594 | 748 | 2.5E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 482 | 582 | 3.5E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 709 | 748 | 1.1E-4 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0018 | IPR006594 |
| SMART | SM00320 | WD40_4 | 491 | 530 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 627 | 665 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 668 | 707 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 572 | 1.4E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 716 | 748 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 540 | 572 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 716 | 748 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.386435 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 498 | 533 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 540 | 572 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 634 | 674 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 498 | 539 | 11.44416 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 517 | 531 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 735 | 748 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 559 | 573 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 517 | 531 | 1.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 411 | - | - |
| Coils | Coil | Coil | 79 | 106 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_050239084.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Quercus robur] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4G286 | transcriptional corepressor LEUNIG_HOMOLOG-like OS=Juglans regia OX=51240 GN=LOC109004057 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology