Basic Information
Locus ID:
Ceq07G0079
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 712822 | 714425 | + | Ceq07G0079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 42,596.18 Da | 44.92 | 87.55 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 28 | 359 | 3.3E-89 | IPR001373 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 21 | 358 | 1.23E-102 | IPR016159 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 14 | 143 | 5.7E-37 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 264 | 360 | 2.7E-24 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 144 | 263 | 8.5E-41 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 0 |
| RefSeq | XP_030961410.1 | cullin-3A isoform X1 [Quercus lobata] | 0 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4Q892 | CULLIN_2 domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_028196 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007000 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0079 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0070 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g08770 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-132 |
| Salicaceae | Populus euphratica | 1 | populus_peu21334 |