Basic Information
Locus ID:
Ceq06G2261
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 25690213 | 25702080 | - | Ceq06G2261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 71,828.59 Da | 53.85 | 58.41 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 178 | 228 | 1.15264E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 247 | 309 | 1.6E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 326 | 374 | 1.9E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 259 | 8.48E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 316 | 7.3E-13 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 603 | 630 | 4.39E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 376 | 6.67E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 257 | 2.5E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 305 | 560 | 6.4E-85 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 596 | 630 | 1.2E-5 | - |
| SMART | SM00647 | ibrneu5 | 313 | 383 | 0.029 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 247 | 309 | 3.9E-24 | IPR002867 |
| SMART | SM00547 | zf_4 | 605 | 629 | 3.4E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 603 | 630 | 8.862888 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 222 | 8.801028 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 174 | 387 | 51.176399 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 607 | 626 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - | - |
| Coils | Coil | Coil | 395 | 415 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_035551393.1 | probable E3 ubiquitin-protein ligase ARI8 [Juglans regia] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9F685 | RBR-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC108982156 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology