halophFGD

Basic Information

Locus ID: Ceq06G2103

Species & Taxonomic ID: Casuarina equisetifolia & 3523

Genome Assembly: GCA_028551475.1

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr06	24114903	24124081	-	Ceq06G2103

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.30	91,502.26 Da	38.81	92.26	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	534	831	5.10779E-93	-
Pfam	PF00400	WD domain, G-beta repeat	747	788	3.5E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	662	700	1.9E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	622	657	3.9E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	534	570	1.8E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	795	831	0.0027	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	576	612	2.2E-8	IPR001680
Pfam	PF12937	F-box-like	106	149	1.5E-5	IPR001810
SUPERFAMILY	SSF50978	WD40 repeat-like	529	831	4.65E-91	IPR036322
SUPERFAMILY	SSF81383	F-box domain	97	150	7.06E-8	IPR036047
SUPERFAMILY	SSF52047	RNI-like	219	367	6.67E-9	-
Gene3D	G3DSA:1.20.1280.50	-	90	143	1.8E-5	-
Gene3D	G3DSA:2.130.10.10	-	521	835	3.0E-120	IPR015943
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	147	381	6.4E-12	IPR032675
SMART	SM00320	WD40_4	703	743	0.04	IPR001680
SMART	SM00320	WD40_4	573	612	5.5E-11	IPR001680
SMART	SM00320	WD40_4	746	788	3.5E-5	IPR001680
SMART	SM00320	WD40_4	619	658	9.3E-10	IPR001680
SMART	SM00320	WD40_4	531	570	6.0E-11	IPR001680
SMART	SM00320	WD40_4	661	700	9.6E-13	IPR001680
SMART	SM00320	WD40_4	791	832	3.6E-5	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	798	835	8.940149	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	798	835	8.971213	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	753	797	12.145943	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	580	612	12.710129	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	580	621	15.989036	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	711	752	9.873505	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	626	663	14.001942	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	538	573	11.971952	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	538	579	15.153581	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	668	700	12.683765	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	753	790	9.335602	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	626	667	18.194637	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	668	709	16.222963	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	775	789	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	645	659	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	687	701	6.2E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	599	613	6.2E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	645	659	6.2E-8	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	26	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10268 (F-box and leucine-rich repeat protein 2/20)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G02760.2	RNI-like superfamily protein.
RefSeq	XP_041018467.1	F-box protein SKIP17-like [Juglans microcarpa x Juglans regia]
Swiss-Prot	Q9SY03	F-box protein At4g02760 OS=Arabidopsis thaliana OX=3702 GN=At4g02760 PE=4 SV=2
TrEMBL	A0A498KB64	F-box domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_002841 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg35305
Anacardiaceae	Pistacia vera	1	pistato.v30027050
Apiaceae	Apium graveolens	2	Ag10G00730, Ag10G00731
Arecaceae	Cocos nucifera	1	COCNU_05G004620
Arecaceae	Phoenix dactylifera	2	gene-LOC103721639, gene-LOC120111042
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.890.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G16624, Ftri9G24326
Brassicaceae	Arabidopsis thaliana	3	AT4G02733.1, AT4G02740.1, AT4G02760.3
Brassicaceae	Eutrema salsugineum	5	Thhalv10028579m.g.v1.0, Thhalv10029278m.g.v1.0 ... Thhalv10029301m.g.v1.0, Thhalv10029382m.g.v1.0, Thhalv10029415m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp6g02700.v2.2, Sp6g02720.v2.2, Sp6g02730.v2.2 ... Sp6g02760.v2.2, Sp6g02780.v2.2
Brassicaceae	Brassica nigra	7	BniB04g051180.2N, BniB08g039420.2N, BniB08g039490.2N ... BniB08g039510.2N, BniB08g039520.2N, BniB08g039550.2N, BniB08g045450.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G2103
Casuarinaceae	Casuarina glauca	1	Cgl06G2218
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g37630
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.1082
Plumbaginaceae	Limonium bicolor	2	Lb1G00627, Lb4G25246
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g05030
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.991, evm.TU.Scaffold_9_RagTag.926
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11356, nbisL1-mrna-21291
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-19896, nbisL1-mrna-5637
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-18388
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.521, evm.TU.utg000006l.308 ... evm.TU.utg000006l.309
Rhizophoraceae	Kandelia obovata	2	Maker00009520, Maker00014118
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1505, nbisL1-mrna-9980
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-5134
Salicaceae	Populus euphratica	2	populus_peu15048, populus_peu32715
Zosteraceae	Zostera marina	2	Zosma06g23090.v3.1, Zosma06g23100.v3.1