Basic Information
Locus ID:
Ceq06G2005
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 23199020 | 23214825 | - | Ceq06G2005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 85,207.30 Da | 44.66 | 68.87 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 504 | 781 | 1.26717E-61 | - |
| Pfam | PF08513 | LisH | 10 | 35 | 2.4E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 581 | 618 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 505 | 532 | 7.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 745 | 781 | 0.0046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 544 | 574 | 6.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 664 | 698 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 495 | 781 | 4.58E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 628 | 781 | 6.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 471 | 627 | 2.3E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 701 | 740 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 621 | 657 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 574 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 532 | 8.1E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0057 | IPR006594 |
| SMART | SM00320 | WD40_4 | 660 | 698 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 618 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 781 | 3.2E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 749 | 781 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 500 | 535 | 8.544697 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.155223 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 585 | 620 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 541 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 542 | 574 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 749 | 781 | 12.604675 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 542 | 574 | 11.286501 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 585 | 620 | 10.34136 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 519 | 533 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 519 | 533 | 6.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 768 | 781 | 6.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 561 | 575 | 6.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 407 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_030933758.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Quercus lobata] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2N9ITU7 | LisH domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology