Basic Information
Locus ID:
Ceq06G1792
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 21047328 | 21055178 | - | Ceq06G1792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 136,629.66 Da | 36.06 | 91.66 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00610 | OAT_like | 829 | 1238 | 1.99708E-147 | IPR005814 |
| Pfam | PF01535 | PPR repeat | 552 | 576 | 0.05 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 184 | 207 | 0.059 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 618 | 647 | 0.0026 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 451 | 476 | 0.023 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 51 | 76 | 0.0016 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 213 | 241 | 4.1E-4 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 652 | 764 | 1.2E-31 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 108 | 155 | 1.8E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 375 | 417 | 5.0E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 478 | 525 | 2.4E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 80 | 105 | 2.6E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 243 | 271 | 5.3E-5 | IPR002885 |
| Pfam | PF00202 | Aminotransferase class-III | 846 | 1239 | 1.5E-85 | IPR005814 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 840 | 1242 | 8.02E-117 | IPR015424 |
| SUPERFAMILY | SSF48452 | TPR-like | 493 | 638 | 1.25E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 10 | 168 | 5.9E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 429 | 542 | 1.7E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 543 | 672 | 6.1E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 307 | 428 | 3.6E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 169 | 304 | 3.1E-24 | IPR011990 |
| Gene3D | G3DSA:3.40.640.10 | - | 881 | 1138 | 2.3E-131 | IPR015421 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 846 | 1241 | 2.3E-131 | IPR015422 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 52 | 74 | 0.0023 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 349 | 378 | 0.0013 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 378 | 411 | 9.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 111 | 144 | 2.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 480 | 513 | 1.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 243 | 277 | 4.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 80 | 105 | 3.5E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 615 | 649 | 9.985802 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 376 | 410 | 11.355965 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 78 | 108 | 10.292718 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 210 | 240 | 9.251395 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 109 | 143 | 10.961357 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 241 | 276 | 10.226951 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 478 | 512 | 12.046526 | IPR002885 |
| ProSitePatterns | PS00600 | Aminotransferases class-III pyridoxal-phosphate attachment site. | 1055 | 1093 | - | IPR005814 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22070.1 | pentatricopeptide (PPR) repeat-containing protein. | 0 |
| RefSeq | XP_035550709.1 | pentatricopeptide repeat-containing protein At2g22070 [Juglans regia] | 0 |
| Q9SHZ8 | Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N6QFR3 | DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_002731 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20109, jg3197, jg38040, jg38041 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14561, gene_7729 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003125, Ah031419 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076880, BVRB_7g157660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15728, Sbi_jg2241, Sbi_jg34267, Sbi_jg56524 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13748, Seu_jg2514 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001819, GOSA_00005960 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl14430, Sgl15112, Sgl19602, Sgl20229, Sgl71026, Sgl74617 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000006460, gene:ENSEOMG00000006975 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0011280, CQ.Regalona.r1.5BG0011660 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30173170, pistato.v30197830, pistato.v30197850 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G01734, Ag5G01647 |
| Arecaceae | Cocos nucifera | 4 | COCNU_03G006370, COCNU_04G004120, COCNU_04G012960 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700724, gene-LOC103702094, gene-LOC103714394 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1734.V1.1, AsparagusV1_07.422.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G16798, Ftri17G31114 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G38400.2, AT3G08860.1, AT4G39660.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016589m.g.v1.0, Thhalv10025073m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g20720.v2.2, Sp7g36230.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g015050.2N, BniB05g000370.2N, BniB06g006170.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq04G0908, Ceq06G1792, Ceq08G0926, Ceq08G1788 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G1028, Cgl06G1857, Cgl08G0945, Cgl08G1849 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18170, gene.Cymno11g06430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0709s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g02570, gene.Thate04g06810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11964, nbisL1-mrna-4304, nbisL1-mrna-4371 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.914, evm.TU.LG02.725 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002624, Pov_00014481, Pov_00025545 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G03610, Lb2G09579, Lb2G11194, Lb2G11909 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3711, AH01.4820, AH05.2049, BH01.4062, BH01.4751 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_3AG0235470, gene-QOZ80_3AG0247560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0071400.1, HORVU.MOREX.r3.4HG0403790.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_014163, gene-QYE76_017686, gene-QYE76_068114 ... |
| Poaceae | Oryza coarctata | 7 | Oco05G004190, Oco05G013110, Oco06G004240, Oco06G013360 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g07570.4, LOC_Os03g21960.1, LOC_Os05g39770.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G360700, gene-BS78_01G465000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101310, Pt_Chr0102685, Pt_Chr0604646 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G018520, Chr01G036080, Chr04G010930, Chr0G008120 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G482800, Tel4E01G306300, Tel4E01G483000 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG044340, gene_TRIDC1BG050240 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G299100.1, TraesCS1B02G308900.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb005550_P001, Zm00001eb016230_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14230, nbis-gene-1631, nbis-gene-4353 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1241, Zma_g27013, Zma_g4327 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2150, evm.TU.LG14.1326 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g08990, gene.Posoc04g14600, gene.Posoc07g13350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5659, nbisL1-mrna-962 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6081, nbisL1-mrna-7131 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2306 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000016l.747, evm.TU.utg000019l.618 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002061, Maker00017024 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4908, nbisL1-mrna-6099 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13827, nbisL1-mrna-1733 |
| Salicaceae | Populus euphratica | 4 | populus_peu11493, populus_peu22988, populus_peu25303 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606756, gene-LOC132613893 |
| Solanaceae | Solanum chilense | 1 | SOLCI004127500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017796, gene-LOC107032369 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_7475, gene_7550 |
| Tamaricaceae | Tamarix chinensis | 2 | TC00000084, TC07G1043 |
| Zosteraceae | Zostera marina | 2 | Zosma01g17640.v3.1, Zosma06g04130.v3.1 |