Basic Information
Locus ID:
Ceq06G1786
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 21000597 | 21006572 | - | Ceq06G1786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 36,064.75 Da | 45.89 | 96.03 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 34 | 82 | 7.57196E-16 | - |
| Pfam | PF12906 | RING-variant domain | 34 | 81 | 5.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 86 | 1.45E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 96 | 1.4E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 33 | 82 | 8.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 26 | 88 | 20.486994 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_042976746.1 | uncharacterized protein LOC122307740 isoform X1 [Carya illinoinensis] | 0 |
| TrEMBL | A0A5N6QIU8 | RING-CH-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_002726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology