Basic Information
Locus ID:
Ceq06G1704
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 19972866 | 19978874 | + | Ceq06G1704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 36,285.46 Da | 39.59 | 98.92 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 207 | 305 | 2.42858E-32 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 78 | 210 | 1.6E-34 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 215 | 308 | 1.5E-19 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 121 | 310 | 1.71E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 312 | 1.0E-11 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 226 | 8.0E-44 | IPR027417 |
| SMART | SM00487 | ultradead3 | 72 | 265 | 2.1E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 242 | 321 | 6.2E-13 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 221 | 324 | 15.931496 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 84 | 220 | 17.651569 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_041016041.1 | eukaryotic initiation factor 4A-3 [Juglans microcarpa x Juglans regia] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1V299 | Eukaryotic initiation factor 4A-3 OS=Morella rubra OX=262757 GN=CJ030_MR7G008252 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology