Basic Information
Locus ID:
Ceq06G1611
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 18678149 | 18682530 | - | Ceq06G1611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 65,478.87 Da | 50.44 | 94.51 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 66 | 112 | 7.0E-26 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 480 | 499 | 1.8 | IPR001611 |
| Pfam | PF18511 | F-box | 7 | 47 | 1.9E-18 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 360 | 517 | 1.57E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 48 | 3.53E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 84 | 345 | 8.24E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 576 | 4.2E-188 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 5.2E-20 | - |
| SMART | SM00367 | LRR_CC_2 | 480 | 504 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 431 | 454 | 250.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 104 | 128 | 240.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 313 | 336 | 450.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 9 | 50 | 4.3E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 155 | 192 | 280.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 371 | 395 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 129 | 154 | 42.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_041022538.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Juglans microcarpa x Juglans regia] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QSV9 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_006026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology