HalophFGD

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Basic Information
Locus ID: Ceq06G1498
Species & Taxonomic ID: Casuarina equisetifolia & 3523
Genome Assembly: GCA_028551475.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
Chr06 17374989 17379727 + Ceq06G1498
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.04 68,199.41 Da 37.27 82.57 -0.23
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 333 381 1.6E-10 IPR002885
Pfam PF13041 PPR repeat family 403 450 3.9E-13 IPR002885
Pfam PF13041 PPR repeat family 228 277 2.1E-11 IPR002885
Pfam PF01535 PPR repeat 302 331 0.48 IPR002885
Pfam PF12854 PPR repeat 190 222 2.0E-5 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 112 170 1.1E-15 IPR002885
SUPERFAMILY SSF81901 HCP-like 133 295 3.53E-6 -
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 57 224 2.4E-39 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 225 317 5.7E-28 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 318 538 3.4E-45 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 267 299 2.7E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 372 405 1.4E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 336 370 6.8E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 302 335 3.5E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 406 439 6.4E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 231 265 9.9E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 197 230 2.6E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 161 194 1.9E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 127 158 8.0E-10 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 404 438 11.904029 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 229 263 11.279235 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 264 298 12.693243 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 299 333 9.602157 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 123 157 13.898986 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 334 368 11.377887 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 158 192 10.347525 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 439 473 9.996763 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 194 228 11.4875 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 369 403 10.424253 IPR002885
MobiDBLite mobidb-lite consensus disorder prediction 1 26 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K17710 (pentatricopeptide repeat domain-containing protein 1)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G21222.1 protein kinase family protein. 0
RefSeq XP_041005276.1 pentatricopeptide repeat-containing protein At5g25630-like isoform X1 [Juglans microcarpa x Juglans regia] 0
Swiss-Prot Q8S9D1 Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1 0
TrEMBL A0A5N6QKU5 Pentatricopeptide repeat-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_003251 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg3824, jg7860
Aizoaceae Mesembryanthemum crystallinum 2 gene_10714, gene_8166
Amaranthaceae Atriplex hortensis 2 Ah014544, Ah034904
Amaranthaceae Beta vulgaris 4 BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae Salicornia bigelovii 4 Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae Salicornia europaea 2 Seu_jg16657, Seu_jg19774
Amaranthaceae Suaeda aralocaspica 1 GOSA_00007807
Amaranthaceae Suaeda glauca 5 Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ...
gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ...
CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae Pistacia vera 2 pistato.v30253400, pistato.v30256590
Apiaceae Apium graveolens 2 Ag10G01538, Ag7G00293
Arecaceae Cocos nucifera 1 COCNU_03G012070
Arecaceae Phoenix dactylifera 1 gene-LOC103710907
Asparagaceae Asparagus officinalis 3 AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ...
AsparagusV1_07.417.V1.1
Asteraceae Flaveria trinervia 1 Ftri3G24253
Brassicaceae Arabidopsis thaliana 2 AT5G21222.1, AT5G25630.2
Brassicaceae Eutrema salsugineum 2 Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae Brassica nigra 3 BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq04G2119, Ceq06G1498
Casuarinaceae Casuarina glauca 3 Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae Thalassia testudinum 1 gene.Thate09g15860
Nitrariaceae Nitraria sibirica 2 evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae Plantago ovata 1 Pov_00003850
Plumbaginaceae Limonium bicolor 2 Lb7G34995, Lb7G35002
Poaceae Echinochloa crus-galli 3 AH06.2290, BH07.3959, CH06.2313
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0248630.1
Poaceae Lolium multiflorum 2 gene-QYE76_051474, gene-QYE76_051482
Poaceae Oryza coarctata 2 Oco01G005680, Oco02G005770
Poaceae Paspalum vaginatum 1 gene-BS78_10G191200
Poaceae Puccinellia tenuiflora 2 Pt_Chr0204886, Pt_Chr0205057
Poaceae Sporobolus alterniflorus 3 Chr07G014820, Chr21G007420, Chr31G007880
Poaceae Thinopyrum elongatum 1 Tel3E01G276300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae Triticum aestivum 3 TraesCS3A02G153300.1, TraesCS3B02G179900.1 ...
TraesCS3D02G160600.2
Poaceae Zea mays 1 Zm00001eb315460_P002
Poaceae Zoysia macrostachya 1 Zma_g29714
Portulacaceae Portulaca oleracea 4 evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ...
evm.TU.LG23.1077
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae Bruguiera sexangula 3 evm.TU.60417.2, evm.TU.60418.2 ...
evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-25631
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-14993
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-4712
Rhizophoraceae Kandelia candel 1 evm.TU.utg000008l.1113
Rhizophoraceae Kandelia obovata 1 Maker00001456
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae Populus euphratica 4 populus_peu04868, populus_peu12782, populus_peu21928 ...
populus_peu38110
Solanaceae Lycium barbarum 2 gene-LOC132603462, gene-LOC132635663
Solanaceae Solanum chilense 2 SOLCI000411300, SOLCI005497300
Solanaceae Solanum pennellii 2 gene-LOC107026118, gene-LOC107028521
Tamaricaceae Reaumuria soongarica 2 STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae Tamarix chinensis 2 TC02G0334, TC12G1292
Zosteraceae Zostera marina 1 Zosma05g13580.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.