Basic Information
Locus ID:
Ceq06G1450
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 16606775 | 16613729 | + | Ceq06G1450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 62,916.36 Da | 33.97 | 102.11 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 257 | 359 | 6.7684E-26 | - |
| CDD | cd00030 | C2 | 436 | 536 | 1.0464E-27 | - |
| Pfam | PF00168 | C2 domain | 434 | 535 | 1.1E-25 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 241 | 2.6E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 256 | 359 | 1.4E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 431 | 553 | 5.69E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 253 | 385 | 1.85E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 247 | 383 | 1.4E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 419 | 552 | 1.5E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 256 | 356 | 4.8E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 435 | 533 | 5.2E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 236 | 357 | 20.257547 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 242 | 29.702995 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 416 | 534 | 21.138159 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 499 | 507 | 2.7E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 490 | 2.7E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 451 | 463 | 2.7E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_041007531.1 | synaptotagmin-5-like [Juglans microcarpa x Juglans regia] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4DVQ1 | synaptotagmin-5-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108983891 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology