Basic Information
Locus ID:
Ceq06G1252
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 12665721 | 12675224 | + | Ceq06G1252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 169,838.38 Da | 40.38 | 108.68 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 330 | 617 | 7.00577E-104 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 643 | 843 | 7.75834E-105 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1286 | 1506 | 4.69271E-126 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 969 | 1263 | 2.92646E-93 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 973 | 1213 | 4.3E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1305 | 1453 | 5.7E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 332 | 597 | 4.4E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 661 | 795 | 4.9E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1278 | 1517 | 6.22E-69 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 968 | 1271 | 4.71E-50 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 318 | 625 | 7.19E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 639 | 865 | 6.98E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1272 | 1524 | 1.3E-82 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 296 | 626 | 1.2E-56 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 637 | 871 | 3.1E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 930 | 1268 | 9.3E-58 | IPR036640 |
| SMART | SM00382 | AAA_5 | 670 | 851 | 8.1E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1314 | 1499 | 3.2E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 643 | 866 | 22.802561 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1288 | 1522 | 18.460846 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 971 | 1241 | 35.489632 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 333 | 609 | 37.7561 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 768 | 782 | - | IPR017871 |
| Coils | Coil | Coil | 288 | 308 | - | - |
| Coils | Coil | Coil | 923 | 943 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_041005602.1 | ABC transporter C family member 5 isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2I4F6B0 | ABC-type xenobiotic transporter OS=Juglans regia OX=51240 GN=LOC108995962 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology