Basic Information
Locus ID:
Ceq06G1127
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 11297919 | 11305195 | - | Ceq06G1127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 70,224.36 Da | 47.21 | 84.61 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 220 | 417 | 1.98184E-100 | - |
| CDD | cd18794 | SF2_C_RecQ | 418 | 551 | 1.85802E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 434 | 541 | 8.3E-14 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 228 | 397 | 6.2E-17 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 554 | 622 | 1.2E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 266 | 562 | 7.2E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 183 | 417 | 1.2E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 418 | 626 | 1.9E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 222 | 426 | 7.3E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 460 | 542 | 6.7E-20 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 220 | 626 | 9.1E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 234 | 410 | 21.021616 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 435 | 582 | 17.908318 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 349 | 358 | - | IPR002464 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_041016664.1 | ATP-dependent DNA helicase Q-like 1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QT22 | ATP-dependent DNA helicase OS=Carpinus fangiana OX=176857 GN=FH972_006683 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology