Basic Information
Locus ID:
Ceq06G1108
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 11027317 | 11036255 | + | Ceq06G1108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 85,060.07 Da | 47.69 | 58.64 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16456 | RING-H2_APC11 | 699 | 761 | 2.23409E-47 | IPR024991 |
| Pfam | PF04795 | PAPA-1-like conserved region | 533 | 618 | 1.8E-20 | IPR006880 |
| Pfam | PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger | 685 | 762 | 6.4E-37 | IPR024991 |
| Pfam | PF04438 | HIT zinc finger | 634 | 665 | 1.2E-6 | IPR007529 |
| SUPERFAMILY | SSF57850 | RING/U-box | 684 | 762 | 2.27E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 677 | 763 | 3.6E-25 | IPR013083 |
| SMART | SM01406 | PAPA_1_2 | 533 | 618 | 4.9E-32 | IPR006880 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 713 | 756 | 11.058237 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 283 | - | - |
| Coils | Coil | Coil | 571 | 591 | - | - |
| Coils | Coil | Coil | 525 | 559 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.2 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_030958122.1 | uncharacterized protein LOC115980059 [Quercus lobata] | 0 |
| Q9M9L0 | Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana OX=3702 GN=APC11 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6QU61 | PAPA-1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_006706 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology