Basic Information
Locus ID:
Ceq06G0989
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 9743646 | 9744299 | + | Ceq06G0989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 21,933.14 Da | 52.34 | 84.67 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 77 | 120 | 5.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 128 | 9.34E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 126 | 2.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 78 | 119 | 4.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 120 | 12.769585 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_035538727.1 | RING-H2 finger protein ATL5-like [Juglans regia] | 0 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QTJ5 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology