Basic Information
Locus ID:
Ceq06G0927
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 9159204 | 9163884 | + | Ceq06G0927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 48,848.39 Da | 46.82 | 75.57 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 334 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 285 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 87 | 336 | 2.66E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 75 | 254 | 2.9E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 432 | 3.2E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 77 | 116 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 334 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 203 | 270.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_018835470.1 | autophagy-related protein 18a-like isoform X2 [Juglans regia] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1US16 | Autophagy-related protein 18a OS=Morella rubra OX=262757 GN=CJ030_MR8G005549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology