Basic Information
Locus ID:
Ceq06G0926
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 9150532 | 9158340 | + | Ceq06G0926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 42,107.65 Da | 33.72 | 83.53 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 237 | 274 | 0.0099 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 26 | 276 | 7.18E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 20 | 353 | 6.0E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 233 | 274 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 230 | 0.01 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_041016803.1 | autophagy-related protein 18a-like [Juglans microcarpa x Juglans regia] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1US16 | Autophagy-related protein 18a OS=Morella rubra OX=262757 GN=CJ030_MR8G005549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology