Basic Information
Locus ID:
Ceq06G0757
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 7402920 | 7407579 | - | Ceq06G0757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 49,026.76 Da | 34.74 | 76.07 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 133 | 207 | 2.63289E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 49 | 119 | 2.05556E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 253 | 360 | 1.61147E-28 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 115 | 2.2E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 297 | 354 | 2.2E-5 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 204 | 8.7E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 296 | 364 | 5.97E-14 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 36 | 125 | 1.88E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 125 | 221 | 1.61E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 129 | 1.4E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 130 | 231 | 1.3E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 232 | 364 | 2.0E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 48 | 117 | 4.5E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 133 | 206 | 7.3E-4 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 133 | 206 | 8.3E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 254 | 356 | 2.6E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 121 | 14.879869 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 253 | 360 | 11.895174 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 210 | 17.438179 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_018814739.1 | oligouridylate-binding protein 1-like [Juglans regia] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QGH2 | Oligouridylate-binding protein 1-like OS=Carpinus fangiana OX=176857 GN=FH972_002962 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology