Basic Information
Locus ID:
Ceq06G0596
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 5717682 | 5728931 | + | Ceq06G0596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 124,478.83 Da | 40.43 | 80.77 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 921 | 955 | 7.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 493 | 8.7E-4 | IPR001680 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 922 | 1110 | 4.58E-14 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 348 | 536 | 5.68E-26 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 502 | 960 | 1.8E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 317 | 520 | 1.2E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 778 | 1106 | 7.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 710 | 1.2E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 916 | 955 | 9.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 537 | 0.02 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 0.64 | IPR001680 |
| SMART | SM00320 | WD40_4 | 832 | 870 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 446 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 583 | 21.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.1E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 873 | 913 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 629 | 670 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 493 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 586 | 626 | 2.5 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.744074 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 635 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 923 | 964 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 923 | 955 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 502 | 10.34136 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1134 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_041008658.1 | topless-related protein 4-like isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T1QWT8 | Topless-related protein 4-like OS=Carya illinoinensis OX=32201 GN=CIPAW_04G173900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology