Basic Information
Locus ID:
Ceq06G0164
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr06 | 1516059 | 1519872 | - | Ceq06G0164 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 39,200.83 Da | 40.74 | 92.41 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 8 | 152 | 1.35791E-37 | IPR044744 |
| Pfam | PF02225 | PA domain | 75 | 139 | 1.7E-8 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 77 | 149 | 2.22E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 221 | 248 | 7.51E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 252 | 3.1E-8 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 21 | 150 | 7.9E-24 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_041017851.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P9DU07 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like OS=Juglans regia OX=51240 GN=LOC108997654 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology