Basic Information
Locus ID:
Ceq05G2348
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
S-locus glycoprotein domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 26283907 | 26287623 | + | Ceq05G2348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 30,718.46 Da | 36.89 | 93.04 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01453 | D-mannose binding lectin | 77 | 162 | 2.7E-23 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 72 | 204 | 4.58E-22 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 27 | 146 | 4.0E-14 | IPR036426 |
| SMART | SM00108 | blect_4 | 30 | 148 | 1.8E-14 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 30 | 146 | 12.594123 | IPR001480 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19130.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_042948565.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 [Carya illinoinensis] | 0 |
| O64477 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana OX=3702 GN=At2g19130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1P7D9 | Receptor-like serine/threonine-protein kinase OS=Carya illinoinensis OX=32201 GN=CIPAW_11G197400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129710, pistato.v30160120 |
| Casuarinaceae | Casuarina equisetifolia | 14 | Ceq01G1391, Ceq01G1393, Ceq01G1394, Ceq01G1396, Ceq01G1397 ... |
| Casuarinaceae | Casuarina glauca | 25 | Cgl01G1556, Cgl01G1558, Cgl01G1559, Cgl01G1561, Cgl01G1566 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1050 |
| Poaceae | Triticum aestivum | 1 | TraesCS2A02G535100.1 |