Basic Information
Locus ID:
Ceq05G2187
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 24482510 | 24492060 | + | Ceq05G2187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 92,845.88 Da | 36.62 | 79.67 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 357 | 412 | 1.59688E-28 | - |
| CDD | cd04716 | BAH_plantDCM_I | 95 | 215 | 3.35984E-55 | - |
| Pfam | PF01426 | BAH domain | 100 | 214 | 1.3E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 357 | 413 | 4.0E-9 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 421 | 780 | 5.7E-34 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 346 | 418 | 2.2E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 249 | 780 | 4.74E-78 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 32 | 200 | 9.9E-50 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 575 | 746 | 1.1E-228 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 355 | 798 | 1.1E-228 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 230 | 334 | 2.5E-14 | - |
| SMART | SM00439 | BAH_4 | 96 | 215 | 4.5E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 356 | 415 | 4.2E-8 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 424 | 775 | 1.4E-30 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 96 | 215 | 17.797333 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 247 | 787 | 43.917824 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 357 | 410 | 12.358401 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 427 | 439 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 516 | 529 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 470 | 484 | 1.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 248 | 264 | 1.8E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_042955968.1 | DNA (cytosine-5)-methyltransferase CMT3 [Carya illinoinensis] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A1WRX1 | DNA (Cytosine-5)-methyltransferase CMT3 OS=Morella rubra OX=262757 GN=CJ030_MR1G013794 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology