Basic Information
Locus ID:
Ceq05G1879
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 20650371 | 20651534 | + | Ceq05G1879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 43,281.63 Da | 39.83 | 108.63 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 60 | 1.4E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 141 | 365 | 3.52E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 62 | 1.27E-17 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 91 | 375 | 1.0E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 63 | 2.6E-19 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 56 | 8.4E-16 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 63 | 29.077581 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_023898051.1 | E3 ubiquitin-protein ligase PUB24-like [Quercus suber] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4VKH1 | RING-type E3 ubiquitin transferase OS=Castanea mollissima OX=60419 GN=CMV_015038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology