Basic Information
Locus ID:
Ceq05G1735
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 18821433 | 18823202 | - | Ceq05G1735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 65,325.42 Da | 50.83 | 71.56 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 178 | 478 | 9.4E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 38 | 75 | 8.7E-8 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 174 | 485 | 1.96E-82 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 32 | 78 | 9.07E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 171 | 490 | 1.5E-88 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 28 | 81 | 3.1E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 38 | 75 | 11.44711 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 178 | 481 | 47.871101 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 179 | 194 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_041016639.1 | LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 17-like [Juglans microcarpa x Juglans regia] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R7H5 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Carpinus fangiana OX=176857 GN=FH972_013689 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology