halophFGD

Basic Information

Locus ID: Ceq05G0781

Species & Taxonomic ID: Casuarina equisetifolia & 3523

Genome Assembly: GCA_028551475.1

Description: Belongs to the class-I aminoacyl-tRNA synthetase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	6816137	6836738	+	Ceq05G0781

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.26	93,216.71 Da	46.48	80.84	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	529	832	4.70763E-64	-
Pfam	PF00400	WD domain, G-beta repeat	761	793	9.4E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	630	664	0.28	IPR001680
Pfam	PF00579	tRNA synthetases class I (W and Y)	131	424	1.5E-58	IPR002305
Pfam	PF00400	WD domain, G-beta repeat	799	832	1.2E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	570	607	3.0E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	528	565	1.8E-8	IPR001680
SUPERFAMILY	SSF52374	Nucleotidylyl transferase	106	435	2.39E-71	-
SUPERFAMILY	SSF50978	WD40 repeat-like	527	831	2.29E-62	IPR036322
Gene3D	G3DSA:3.40.50.620	HUPs	96	261	3.0E-68	IPR014729
Gene3D	G3DSA:2.130.10.10	-	529	697	1.6E-45	IPR015943
Gene3D	G3DSA:3.40.50.620	HUPs	262	453	1.3E-75	IPR014729
Gene3D	G3DSA:2.130.10.10	-	698	832	8.6E-37	IPR015943
SMART	SM00320	WD40_4	796	835	1.7E-4	IPR001680
SMART	SM00320	WD40_4	667	750	2.2	IPR001680
SMART	SM00320	WD40_4	754	793	6.0E-10	IPR001680
SMART	SM00320	WD40_4	616	664	1.9	IPR001680
SMART	SM00320	WD40_4	568	607	4.5E-11	IPR001680
SMART	SM00320	WD40_4	526	565	4.5E-12	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	533	574	18.495401	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	761	793	11.840134	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	803	836	9.256512	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	575	607	10.311051	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	575	607	12.379869	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	533	568	14.502848	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	803	832	10.541869	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	761	802	14.819399	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	552	566	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	552	566	4.7E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	651	665	4.7E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	780	794	4.7E-5	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	81	100	-	-

Gene Ontology

Biological Process:

GO:0006418 (tRNA aminoacylation for protein translation)

Molecular Function:

GO:0000166 (nucleotide binding) GO:0004812 (aminoacyl-tRNA ligase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K01866 (tyrosyl-tRNA synthetase [EC:6.1.1.1])

Pathway:

ko00970 (Aminoacyl-tRNA biosynthesis) map00970 (Aminoacyl-tRNA biosynthesis)

Reaction:

R02918 (ATP + L-Tyrosine + tRNA(Tyr) <=> AMP + Diphosphate + L-Tyrosyl-tRNA(Tyr))

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33840.1	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial.
RefSeq	XP_042953054.1	tyrosine--tRNA ligase 1, cytoplasmic-like [Carya illinoinensis]
Swiss-Prot	Q8S9J2	Tyrosine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At2g33840 PE=2 SV=1
TrEMBL	A0A8T1NUG9	Tyrosine--tRNA ligase OS=Carya illinoinensis OX=32201 GN=CIPAW_12G092900 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19205, jg21239
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14741, gene_15235
Amaranthaceae	Atriplex hortensis	1	Ah023527
Amaranthaceae	Beta vulgaris	1	BVRB_7g162780
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg27676, Sbi_jg32642, Sbi_jg62751
Amaranthaceae	Salicornia europaea	2	Seu_jg24088, Seu_jg7655
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00028003
Amaranthaceae	Suaeda glauca	2	Sgl71615, Sgl75185
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000015473, gene:ENSEOMG00000036941 ... gene:ENSEOMG00000048654
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.1BG0016500
Anacardiaceae	Pistacia vera	2	pistato.v30165970, pistato.v30242440
Apiaceae	Apium graveolens	1	Ag11G03730
Arecaceae	Cocos nucifera	1	COCNU_07G005420
Arecaceae	Phoenix dactylifera	1	gene-LOC103716533
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1705.V1.1, AsparagusV1_08.308.V1.1 ... AsparagusV1_08.345.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G14889, Ftri15G11369
Brassicaceae	Arabidopsis thaliana	2	AT1G28350.1, AT2G33840.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10016782m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g24590.v2.2
Brassicaceae	Brassica nigra	2	BniB03g017090.2N, BniB03g033210.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq05G0781, Ceq05G0783, Ceq05G0787, Ceq05G0788, Ceq05G0791
Casuarinaceae	Casuarina glauca	2	Cgl05G0791, Cgl05G0797
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno12g04140
Dunaliellaceae	Dunaliella salina	1	Dusal.0469s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g10410
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-667
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.1981
Plantaginaceae	Plantago ovata	2	Pov_00000060, Pov_00040225
Plumbaginaceae	Limonium bicolor	2	Lb2G09254, Lb2G09273
Poaceae	Echinochloa crus-galli	8	AH01.78, AH08.302, BH01.845, BH02.3292, BH08.304, CH01.3100 ... CH07.3149, CH08.380
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0143650, gene-QOZ80_2BG0199000 ... gene-QOZ80_2BG0199030, gene-QOZ80_3BG0279760, gene-QOZ80_7AG0571930, gene-QOZ80_8AG0617240, gene-QOZ80_8BG0644860, gene-QOZ80_9AG0691250, gene-QOZ80_9BG0717520
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0701140.1
Poaceae	Lolium multiflorum	42	gene-QYE76_005729, gene-QYE76_007565, gene-QYE76_007572 ... gene-QYE76_021139, gene-QYE76_024967, gene-QYE76_032499, gene-QYE76_032529, gene-QYE76_043805, gene-QYE76_043806, gene-QYE76_043807, gene-QYE76_043808, gene-QYE76_050563, gene-QYE76_056566, gene-QYE76_056577, gene-QYE76_056624, gene-QYE76_056648, gene-QYE76_056649, gene-QYE76_056651, gene-QYE76_056652, gene-QYE76_056653, gene-QYE76_056654, gene-QYE76_056655, gene-QYE76_056656, gene-QYE76_056657, gene-QYE76_056658, gene-QYE76_056659, gene-QYE76_056660, gene-QYE76_056661, gene-QYE76_056662, gene-QYE76_056663, gene-QYE76_056664, gene-QYE76_056665, gene-QYE76_056667, gene-QYE76_056668, gene-QYE76_056669, gene-QYE76_058455, gene-QYE76_059068, gene-QYE76_061188, gene-QYE76_061190, gene-QYE76_061191, gene-QYE76_061193, gene-QYE76_061197
Poaceae	Oryza coarctata	6	Oco15G001990, Oco15G003710, Oco15G006050, Oco16G002050 ... Oco16G003630, Oco16G005900
Poaceae	Oryza sativa	5	LOC_Os04g58400.1, LOC_Os07g47860.1, LOC_Os08g05490.1 ... LOC_Os08g09260.1, LOC_Os08g23110.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G257000, gene-BS78_07G043300 ... gene-BS78_07G198500
Poaceae	Puccinellia tenuiflora	15	Pt_Chr0104654, Pt_Chr0104958, Pt_Chr0105394, Pt_Chr0105395 ... Pt_Chr0105477, Pt_Chr0105478, Pt_Chr0106995, Pt_Chr0202267, Pt_Chr0203391, Pt_Chr0204832, Pt_Chr0204833, Pt_Chr0304476, Pt_Chr0305639, Pt_Chr0405594, Pt_Chr0703515
Poaceae	Sporobolus alterniflorus	5	Chr06G003520, Chr16G001110, Chr17G001050, Chr20G010690 ... Chr29G011650
Poaceae	Thinopyrum elongatum	5	Tel1E01G530400, Tel6E01G347900, Tel6E01G520800 ... Tel6E01G766200, Tel7E01G524800
Poaceae	Triticum dicoccoides	9	gene_TRIDC5AG041010, gene_TRIDC5BG043460 ... gene_TRIDC6AG025260, gene_TRIDC6AG060720, gene_TRIDC6BG031480, gene_TRIDC6BG051180, gene_TRIDC6BG072560, gene_TRIDC7AG042550, gene_TRIDC7BG033670
Poaceae	Triticum aestivum	12	TraesCS5A02G198600.1, TraesCS5A02G270800.1 ... TraesCS6A02G413600.1, TraesCS6B02G109700.1, TraesCS6B02G204800.1, TraesCS6B02G313700.1, TraesCS6B02G462900.1, TraesCS7A02G087100.1.cds1, TraesCS7A02G304700.1, TraesCS7B02G205000.2, TraesCS7D02G081600.1.cds1, TraesCS7D02G300200.1
Poaceae	Zea mays	2	Zm00001eb172860_P001, Zm00001eb416340_P002
Poaceae	Zoysia japonica	4	nbis-gene-39112, nbis-gene-45835, nbis-gene-45837 ... nbis-gene-45935
Poaceae	Zoysia macrostachya	1	Zma_g22460
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.602, evm.TU.LG26.429
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g02350
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.1394, evm.TU.Scaffold_9_RagTag.1275
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11911, nbisL1-mrna-20893
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-8464, nbisL1-mrna-8716
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11065, nbisL1-mrna-21260
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.785, evm.TU.utg000006l.815
Rhizophoraceae	Kandelia obovata	2	Maker00009375, Maker00013434
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10340, nbisL1-mrna-10341, nbisL1-mrna-1269
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-4800
Salicaceae	Populus euphratica	2	populus_peu06000, populus_peu19861
Solanaceae	Lycium barbarum	1	gene-LOC132599145
Solanaceae	Solanum chilense	1	SOLCI003001500
Solanaceae	Solanum pennellii	1	gene-LOC107008204
Tamaricaceae	Reaumuria soongarica	3	MSTRG.3982_chr02_+, gene_1267, gene_13912
Tamaricaceae	Tamarix chinensis	1	TC01G4284
Zosteraceae	Zostera marina	1	Zosma05g00470.v3.1