Basic Information
Locus ID:
Ceq05G0731
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 6404306 | 6412518 | + | Ceq05G0731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 58,846.28 Da | 39.63 | 80.83 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 367 | 501 | 6.12628E-38 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 367 | 502 | 4.7E-37 | IPR000608 |
| Pfam | PF07712 | Stress up-regulated Nod 19 | 2 | 271 | 1.1E-122 | IPR011692 |
| SUPERFAMILY | SSF54495 | UBC-like | 356 | 514 | 3.39E-47 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 359 | 517 | 9.7E-46 | IPR016135 |
| SMART | SM00212 | ubc_7 | 366 | 508 | 5.9E-35 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 363 | 508 | 38.03688 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 435 | 450 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36800.1 | RUB1 conjugating enzyme 1. RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. | 0 |
| RefSeq | XP_041025779.1 | uncharacterized protein LOC121266114 [Juglans microcarpa x Juglans regia] | 0 |
| Q9SDY5 | NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana OX=3702 GN=RCE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A833XCJ5 | Stress up-regulated Nod 19 OS=Juglans regia OX=51240 GN=F2P56_014054 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27107 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_13931, gene_13932, gene_13933, gene_19751 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah001478, Ah001491, Ah030480, Ah033882 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg58400 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28278 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54937, Sgl60197 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021660, gene:ENSEOMG00000023837 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0018280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012740 |
| Apiaceae | Apium graveolens | 3 | Ag4G01938, Ag9G00646, Ag9G01219 |
| Arecaceae | Cocos nucifera | 1 | scaffold015211G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720742 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1608.V1.1, AsparagusV1_10.416.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G11469, Ftri18G21659 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G61820.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004123m.g.v1.0, Thhalv10004141m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g002620.2N, BniB06g010190.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0730, Ceq05G0731 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0739 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g13120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g12180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11463 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG05.537, evm.TU.LG05.538, evm.TU.LG05.539 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020059, Pov_00020060 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13132, Lb5G28421 |
| Poaceae | Echinochloa crus-galli | 5 | AH08.2219, AH08.2220, BH08.2348, CH08.2524, CH08.2525 |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_8AG0638300, gene-QOZ80_8AG0638390 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0501740.1, HORVU.MOREX.r3.5HG0501750.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030353 |
| Poaceae | Oryza coarctata | 2 | Oco15G009650, Oco16G012780 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42590.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G207900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403546 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr20G002250, Chr20G002270, Chr29G001150 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G662000, Tel5E01G662100, Tel7E01G463200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG061050, gene_TRIDC5BG065130 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1B02G414500.1, TraesCS5A02G421800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb037110_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17554, nbis-gene-42740 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23345, Zma_g24454 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.145, evm.TU.LG09.1383 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g00510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.291 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29064 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6898 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2011 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.184 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001226 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2461 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6129 |
| Salicaceae | Populus euphratica | 5 | populus_peu28979, populus_peu28980, populus_peu28981 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603608, gene-LOC132627697 |
| Solanaceae | Solanum chilense | 2 | SOLCI002275000, SOLCI006355900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007345, gene-LOC107022446 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17949_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1785 |