Basic Information
Locus ID:
Ceq05G0724
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 6362063 | 6363317 | - | Ceq05G0724 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 27,883.00 Da | 52.00 | 63.09 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 26 | 70 | 4.07655E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 27 | 68 | 1.5E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 81 | 5.95E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 89 | 1.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 28 | 68 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 28 | 69 | 13.108904 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 115 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_030924059.1 | E3 ubiquitin-protein ligase RNF185-like [Quercus lobata] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QNY9 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_004259 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology