Basic Information
Locus ID:
Ceq05G0718
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 6304552 | 6311502 | + | Ceq05G0718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 60,220.69 Da | 57.25 | 68.09 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 155 | 207 | 2.76038E-29 | - |
| Pfam | PF00412 | LIM domain | 155 | 210 | 4.0E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 304 | 524 | 1.6E-103 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 181 | 236 | 5.59E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 147 | 180 | 1.96E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 150 | 214 | 2.3E-15 | - |
| SMART | SM00726 | uim | 40 | 59 | 37.0 | IPR003903 |
| SMART | SM00726 | uim | 114 | 133 | 0.059 | IPR003903 |
| SMART | SM00132 | lim_4 | 154 | 206 | 2.9E-13 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 153 | 213 | 12.087999 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 114 | 133 | 10.010044 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 155 | 189 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 474 | - | - |
| Coils | Coil | Coil | 21 | 41 | - | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_041000311.1 | protein DA1-related 1-like [Juglans microcarpa x Juglans regia] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2I4FCP5 | protein DA1-related 1 OS=Juglans regia OX=51240 GN=LOC108997551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology