Basic Information
Locus ID:
Ceq05G0239
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 2007648 | 2013765 | - | Ceq05G0239 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 25,494.10 Da | 47.47 | 94.32 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 128 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 212 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 81 | 212 | 1.55E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 58 | 213 | 1.6E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 3.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 214 | 8.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 128 | 0.31 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 170 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 170 | 9.836508 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.2 | Coatomer, beta' subunit. | 0 |
| RefSeq | XP_023879063.1 | coatomer subunit beta'-1-like [Quercus suber] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A565B8B8 | Coatomer subunit beta' OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS8237 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology