Basic Information
Locus ID:
Ceq05G0230
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 1952471 | 1953312 | - | Ceq05G0230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 11,054.37 Da | 21.88 | 96.44 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 42 | 79 | 1.2E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 84 | 9.89E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 99 | 1.1E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 7.2E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.943775 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 82 | 13.181907 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 66 | 80 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_030925466.1 | coatomer subunit beta'-1-like [Quercus lobata] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4VVY3 | WD_REPEATS_REGION domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_012547 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology