Basic Information
Locus ID:
Ceq04G2464
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
C1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 29639301 | 29641926 | + | Ceq04G2464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 70,666.44 Da | 51.60 | 66.58 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 77 | 112 | 8.0E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 314 | 359 | 7.7E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 122 | 166 | 3.5E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 485 | 533 | 3.4E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 369 | 414 | 5.9E-10 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 87 | 178 | 4.53E-17 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 458 | 541 | 7.85E-15 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 191 | 280 | 3.02E-10 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 341 | 428 | 4.4E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 263 | 362 | 3.92E-12 | - |
| SMART | SM00249 | PHD_3 | 83 | 143 | 0.79 | IPR001965 |
| SMART | SM00249 | PHD_3 | 504 | 554 | 4.6 | IPR001965 |
| SMART | SM00109 | c1_12 | 124 | 176 | 0.52 | IPR002219 |
| SMART | SM00109 | c1_12 | 231 | 288 | 0.025 | IPR002219 |
| SMART | SM00249 | PHD_3 | 331 | 393 | 18.0 | IPR001965 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40320.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_018848904.1 | uncharacterized protein LOC109011949 [Juglans regia] | 0 |
| TrEMBL | A0A2I4GYD7 | uncharacterized protein LOC109011949 OS=Juglans regia OX=51240 GN=LOC109011949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |