Basic Information
Locus ID:
Ceq04G2381
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 28571353 | 28582232 | + | Ceq04G2381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 119,992.22 Da | 39.28 | 83.98 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 452 | 2.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 459 | 495 | 0.098 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 872 | 907 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 359 | 924 | 3.61E-44 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 731 | 1056 | 1.31E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 508 | 651 | 3.5E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 919 | 1060 | 7.8E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 685 | 918 | 1.9E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 204 | 507 | 2.1E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 31.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.5E-10 | IPR006595 |
| SMART | SM00320 | WD40_4 | 361 | 405 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 496 | 0.0034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 787 | 822 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 961 | 1000 | 2.6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1052 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 907 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 865 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 452 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 542 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 875 | 916 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.834518 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 875 | 907 | 10.284687 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 456 | 8.940149 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 11.968239 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 461 | 11.377324 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_042989911.1 | protein TOPLESS-like [Carya illinoinensis] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1Q492 | Topless-related protein 1-like OS=Carya illinoinensis OX=32201 GN=CIPAW_07G225900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology