Basic Information
Locus ID:
Ceq04G2380
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Topless-related protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 28560518 | 28568458 | - | Ceq04G2380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 129,102.72 Da | 36.73 | 85.62 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 508 | 542 | 5.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 940 | 972 | 0.024 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 56 | 84 | 3.4E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 503 | 972 | 8.83E-38 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 397 | 621 | 6.91E-27 | IPR011047 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 903 | 1142 | 2.94E-13 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 990 | 1142 | 9.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 362 | 565 | 3.8E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 759 | 987 | 6.2E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 566 | 743 | 4.3E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1024 | 1065 | 0.85 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 675 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 586 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 632 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 495 | 370.0 | IPR001680 |
| SMART | SM00668 | ctlh | 85 | 143 | 3.9E-11 | IPR006595 |
| SMART | SM00320 | WD40_4 | 850 | 887 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 501 | 542 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 890 | 930 | 5.8 | IPR001680 |
| SMART | SM00667 | Lish | 55 | 87 | 1.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 933 | 972 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 434 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 508 | 551 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 940 | 972 | 9.309238 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 55 | 87 | 10.395773 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 940 | 981 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 86 | 143 | 12.437082 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 529 | 543 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_050268371.1 | topless-related protein 1-like isoform X1 [Quercus robur] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R984 | Topless-related protein 1-like OS=Carpinus fangiana OX=176857 GN=FH972_013118 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology