Basic Information
Locus ID:
Ceq04G2310
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 27944645 | 27954876 | - | Ceq04G2310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 162,323.64 Da | 44.48 | 66.02 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 394 | 415 | 0.63 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1122 | 1150 | 0.0011 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 458 | 486 | 0.0011 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 656 | 774 | 2.4E-39 | IPR032867 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 1322 | 1438 | 3.2E-31 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 489 | 517 | 0.0033 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 561 | 584 | 0.64 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1225 | 1248 | 0.64 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1058 | 1079 | 0.64 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1153 | 1181 | 0.0033 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 389 | 549 | 1.5E-29 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1054 | 1214 | 6.5E-30 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 489 | 521 | 6.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1153 | 1185 | 6.2E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1150 | 1184 | 10.621557 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 486 | 520 | 10.621557 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1119 | 1149 | 9.229472 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 455 | 485 | 9.229472 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 347 | - | - |
| Coils | Coil | Coil | 1304 | 1324 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_018851979.2 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Juglans regia] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R6X7 | DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_013179 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology