Basic Information
Locus ID:
Ceq04G2244
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 27383842 | 27389686 | - | Ceq04G2244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 35,942.39 Da | 48.30 | 53.97 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 67 | 148 | 1.8E-18 | IPR008913 |
| Pfam | PF14634 | zinc-RING finger domain | 203 | 247 | 4.3E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 250 | 308 | 1.6E-26 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 139 | 196 | 1.02E-18 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 202 | 251 | 1.09E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 64 | 138 | 1.57E-15 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 248 | 1.3E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 274 | 312 | 1.7E-18 | - |
| SMART | SM00184 | ring_2 | 203 | 245 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 60 | 136 | 24.810165 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 138 | 202 | 33.86335 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 246 | 11.95817 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_018834717.1 | probable E3 ubiquitin-protein ligase RZFP34 [Juglans regia] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6R9H1 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_013223 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology