Basic Information
Locus ID:
Ceq04G2158
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 26419002 | 26427487 | - | Ceq04G2158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 47,526.62 Da | 34.65 | 67.41 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 144 | 218 | 4.74629E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 264 | 338 | 1.30638E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 266 | 331 | 2.8E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 145 | 215 | 2.1E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 60 | 126 | 4.4E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 57 | 222 | 4.51E-42 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 256 | 347 | 4.21E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 141 | 3.2E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 142 | 239 | 3.5E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 242 | 342 | 1.7E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 144 | 217 | 1.7E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 265 | 334 | 3.6E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 144 | 217 | 4.1E-4 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 59 | 128 | 2.3E-14 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 265 | 334 | 5.8 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 58 | 132 | 14.726371 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 143 | 221 | 17.131182 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 264 | 338 | 16.295467 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_030947306.1 | oligouridylate-binding protein 1B-like [Quercus lobata] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R695 | Oligouridylate-binding protein 1-like OS=Carpinus fangiana OX=176857 GN=FH972_013297 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology