Basic Information
Locus ID:
Ceq04G1477
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 19200870 | 19205683 | + | Ceq04G1477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.36 | 66,148.37 Da | 44.67 | 90.32 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 79 | 124 | 2.3E-21 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 166 | 183 | 0.24 | IPR001611 |
| Pfam | PF18511 | F-box | 19 | 59 | 9.4E-19 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 117 | 552 | 4.19E-32 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 53 | 4.19E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 57 | 1.1E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 586 | 1.7E-169 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 328 | 351 | 250.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 495 | 520 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 34.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 386 | 410 | 38.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 446 | 469 | 82.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_034697762.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Vitis riparia] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6Q8L5 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_000348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology