Basic Information
Locus ID:
Ceq04G1429
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 18720903 | 18722486 | + | Ceq04G1429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 59,536.85 Da | 56.09 | 62.82 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 254 | 302 | 9.6E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 175 | 238 | 3.9E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 245 | 6.89E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 187 | 1.48E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 304 | 3.32E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 190 | 5.0E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 234 | 476 | 2.4E-59 | - |
| SMART | SM00647 | ibrneu5 | 247 | 311 | 0.048 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 175 | 238 | 6.8E-23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 102 | 315 | 43.29821 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 106 | 152 | 9.00757 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 287 | 296 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 517 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_015952154.1 | probable E3 ubiquitin-protein ligase ARI7 [Arachis duranensis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QBC4 | RBR-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_000704 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology