Basic Information
Locus ID:
Ceq04G1296
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 16310805 | 16317949 | + | Ceq04G1296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 111,250.13 Da | 50.65 | 103.37 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 263 | 304 | 1.2399E-19 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 923 | 955 | 2.4E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 530 | 569 | 3.6E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 263 | 330 | 2.0E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 332 | 3.09E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 331 | 995 | 7.41E-39 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 335 | 430 | 1.4E-8 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 625 | 854 | 7.9E-24 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 12 | 126 | 5.5E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 431 | 624 | 3.4E-24 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 862 | 1003 | 1.3E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 334 | 8.7E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 3.9E-25 | IPR003613 |
| SMART | SM00185 | arm_5 | 529 | 569 | 0.0096 | IPR000225 |
| SMART | SM00185 | arm_5 | 750 | 796 | 400.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 707 | 749 | 420.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 570 | 613 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 363 | 403 | 69.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 872 | 913 | 22.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 917 | 957 | 0.57 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 33.411976 | IPR003613 |
| Coils | Coil | Coil | 193 | 220 | - | - |
| Coils | Coil | Coil | 58 | 88 | - | - |
| Coils | Coil | Coil | 137 | 157 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_041000599.1 | U-box domain-containing protein 24-like [Juglans microcarpa x Juglans regia] | 0 |
| Q10FT0 | U-box domain-containing protein 24 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4QWB8 | RING-type E3 ubiquitin transferase OS=Castanea mollissima OX=60419 GN=CMV_014948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |