Basic Information
Locus ID:
Ceq04G1051
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
COP9 signalosome complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 12094772 | 12099739 | - | Ceq04G1051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 44,623.48 Da | 40.64 | 74.00 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 302 | 4.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 191 | 1.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 150 | 395 | 1.94E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 134 | 207 | 4.7E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 212 | 402 | 5.8E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 309 | 350 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 392 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 191 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 303 | 1.0E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 200 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 312 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 11.103175 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 124 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030967528.1 | zinc finger CCCH domain-containing protein 17-like isoform X2 [Quercus lobata] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RDY1 | Zinc finger CCCH domain-containing protein 48-like OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology