Basic Information
Locus ID:
Ceq04G1042
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 11987788 | 11992777 | + | Ceq04G1042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 49,876.45 Da | 41.86 | 80.44 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 191 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 313 | 6.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 352 | 1.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 153 | 444 | 3.16E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 209 | 1.9E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 211 | 451 | 1.1E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 231 | 268 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 313 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 353 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 151 | 191 | 1.5E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 323 | 352 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 322 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 200 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 10.915394 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 323 | 362 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 283 | 313 | 9.124694 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 178 | 192 | 4.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 300 | 314 | 4.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 340 | 354 | 4.0E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_050280479.1 | zinc finger CCCH domain-containing protein 48-like [Quercus robur] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A660KNW2 | C3H1-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_010645 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology