Basic Information
Locus ID:
Ceq04G1039
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 11964276 | 11969423 | + | Ceq04G1039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 52,691.65 Da | 39.54 | 84.15 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 204 | 239 | 7.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 358 | 0.029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 194 | 464 | 3.44E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 193 | 359 | 2.7E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 360 | 474 | 2.4E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 279 | 316 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 324 | 375 | 0.0082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 464 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 239 | 3.2E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 248 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 207 | 239 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 362 | 384 | 9.138305 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030967528.1 | zinc finger CCCH domain-containing protein 17-like isoform X2 [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6Q9V7 | Zinc finger CCCH domain-containing protein 48 OS=Carpinus fangiana OX=176857 GN=FH972_000707 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology