Basic Information
Locus ID:
Ceq04G1031
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 11869963 | 11874946 | - | Ceq04G1031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 29,365.12 Da | 49.38 | 71.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 147 | 182 | 2.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 235 | 268 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 143 | 268 | 1.38E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 126 | 204 | 3.3E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 269 | 2.2E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 2.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 270 | 0.0069 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 182 | 10.759232 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 10.915394 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 191 | 13.449252 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_014624689.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Glycine max] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6REV3 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology