Basic Information
Locus ID:
Ceq04G0839
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 9456528 | 9459642 | + | Ceq04G0839 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 43,364.62 Da | 72.46 | 54.33 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 260 | 301 | 3.18332E-24 | - |
| Pfam | PF13639 | Ring finger domain | 259 | 301 | 3.5E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 81 | 112 | 2.5E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 307 | 1.75E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 223 | 307 | 3.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 260 | 300 | 7.1E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 52 | 104 | 18.0 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 260 | 301 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 386 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_041027756.1 | probable E3 ubiquitin-protein ligase RHC1A [Juglans microcarpa x Juglans regia] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RW35 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_019949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology